diff --git a/CHANGELOG.md b/CHANGELOG.md
index a6a5bffc9f7..645c7590930 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -25,6 +25,7 @@ Docs: https://docs.openclaw.ai
 
 - Gateway/update: run `doctor --non-interactive --fix` after Control UI global package updates before reporting success, so legacy config is migrated before the gateway restart. Thanks @stevenchouai.
 - Gateway/cron: stop a lazy cron startup that loses a hot-reload race, preventing the old cron service from starting after reload has already replaced cron state.
+- CLI/plugins: warn when npm plugin installs remain shadowed by a failing config-selected source and surface the repair path in `plugins doctor`. Thanks @LindalyX-Lee.
 - Active Memory: apply `setupGraceTimeoutMs` to the embedded recall runner as well as the outer prompt-build watchdog, so very-cold first recalls keep the configured setup grace end-to-end. (#74480) Thanks @volcano303.
 - CLI/config: keep JSON dry-run patches validating touched channel configuration against bundled channel schemas even when the patch only contains SecretRef objects.
 - Plugins/tools: keep disabled bundled tool plugins out of explicit runtime allowlist ownership and fall back from loaded-but-empty channel registries to tool-bearing plugin registries, so Active Memory can use bundled `memory-core` search/get tools even when `memory-lancedb` is disabled. Fixes #76603. Thanks @jwong-art.
diff --git a/src/cli/plugins-cli.list.test.ts b/src/cli/plugins-cli.list.test.ts
index 5abd73f54ba..ec820743743 100644
--- a/src/cli/plugins-cli.list.test.ts
+++ b/src/cli/plugins-cli.list.test.ts
@@ -112,6 +112,32 @@ describe("plugins cli list", () => {
     expect(output).toContain("openclaw plugins registry --refresh");
   });
 
+  it("does not report healthy config-selected plugin source shadowing as doctor issue", async () => {
+    buildPluginDiagnosticsReport.mockReturnValue({
+      plugins: [
+        createPluginRecord({
+          id: "discord",
+          origin: "config",
+          source: "/tmp/openclaw-upstream/extensions/discord/index.ts",
+          status: "loaded",
+        }),
+      ],
+      diagnostics: [
+        {
+          level: "warn",
+          pluginId: "discord",
+          source: "/tmp/openclaw/npm/node_modules/@openclaw/discord/index.ts",
+          message:
+            "duplicate plugin id resolved by explicit config-selected plugin; global plugin will be overridden by config plugin (/tmp/openclaw-upstream/extensions/discord/index.ts)",
+        },
+      ],
+    });
+
+    await runPluginsCommand(["plugins", "doctor"]);
+
+    expect(runtimeLogs).toContain("No plugin issues detected.");
+  });
+
   it("reports persisted plugin registry state without refreshing", async () => {
     inspectPluginRegistry.mockResolvedValue({
       state: "stale",
diff --git a/src/cli/plugins-cli.ts b/src/cli/plugins-cli.ts
index 10eded74098..9c254c44c23 100644
--- a/src/cli/plugins-cli.ts
+++ b/src/cli/plugins-cli.ts
@@ -71,6 +71,21 @@ function isConfigSelectedShadowDiagnostic(entry: { level?: string; message?: str
   );
 }
 
+function isErroredConfigSelectedShadowDiagnostic(params: {
+  entry: { level?: string; message?: string; pluginId?: string };
+  plugins: readonly { id: string; origin: string; status: string }[];
+}): boolean {
+  if (!params.entry.pluginId || !isConfigSelectedShadowDiagnostic(params.entry)) {
+    return false;
+  }
+  return params.plugins.some(
+    (plugin) =>
+      plugin.id === params.entry.pluginId &&
+      plugin.origin === "config" &&
+      plugin.status === "error",
+  );
+}
+
 export function registerPluginsCli(program: Command) {
   const plugins = program
     .command("plugins")
@@ -345,7 +360,9 @@ export function registerPluginsCli(program: Command) {
       const report = buildPluginDiagnosticsReport({ effectiveOnly: true });
       const errors = report.plugins.filter((p) => p.status === "error");
       const diags = report.diagnostics.filter((d) => d.level === "error");
-      const shadowed = report.diagnostics.filter(isConfigSelectedShadowDiagnostic);
+      const shadowed = report.diagnostics.filter((entry) =>
+        isErroredConfigSelectedShadowDiagnostic({ entry, plugins: report.plugins }),
+      );
       const compatibility = buildPluginCompatibilityNotices({ report });
 
       if (
diff --git a/src/cli/plugins-install-persist.test.ts b/src/cli/plugins-install-persist.test.ts
index 4ff4334e3ed..b981171a6b3 100644
--- a/src/cli/plugins-install-persist.test.ts
+++ b/src/cli/plugins-install-persist.test.ts
@@ -183,6 +183,49 @@ describe("persistPluginInstall", () => {
     expect(runtimeLogs.join("\n")).toContain("openclaw plugins doctor");
   });
 
+  it("does not warn when the config-selected source is inside the npm install path", async () => {
+    const { persistPluginInstall } = await import("./plugins-install-persist.js");
+    const baseConfig = {
+      plugins: {
+        entries: {},
+      },
+    } as OpenClawConfig;
+    const enabledConfig = {
+      plugins: {
+        entries: {
+          discord: { enabled: true },
+        },
+      },
+    } as OpenClawConfig;
+    enablePluginInConfig.mockReturnValue({ config: enabledConfig });
+    buildPluginSnapshotReport.mockReturnValue({
+      plugins: [
+        {
+          id: "discord",
+          origin: "config",
+          source: "/tmp/openclaw/npm/node_modules/@openclaw/discord/dist/index.js",
+          status: "loaded",
+        },
+      ],
+      diagnostics: [],
+    });
+
+    await persistPluginInstall({
+      snapshot: {
+        config: baseConfig,
+        baseHash: "config-1",
+      },
+      pluginId: "discord",
+      install: {
+        source: "npm",
+        spec: "@openclaw/discord",
+        installPath: "/tmp/openclaw/npm/node_modules/@openclaw/discord",
+      },
+    });
+
+    expect(runtimeLogs.join("\n")).not.toContain("is not the active source");
+  });
+
   it("invalidates runtime cache even when registry refresh fails", async () => {
     const { persistPluginInstall } = await import("./plugins-install-persist.js");
     const baseConfig = {
diff --git a/src/cli/plugins-install-persist.ts b/src/cli/plugins-install-persist.ts
index b032388ee5d..4c787c1b5c4 100644
--- a/src/cli/plugins-install-persist.ts
+++ b/src/cli/plugins-install-persist.ts
@@ -1,6 +1,7 @@
 import { replaceConfigFile } from "../config/config.js";
 import type { OpenClawConfig } from "../config/types.openclaw.js";
 import { type HookInstallUpdate, recordHookInstall } from "../hooks/installs.js";
+import { isPathInside } from "../infra/path-guards.js";
 import { enablePluginInConfig } from "../plugins/enable.js";
 import {
   loadInstalledPluginIndexInstallRecords,
@@ -12,7 +13,7 @@ import { tracePluginLifecyclePhaseAsync } from "../plugins/plugin-lifecycle-trac
 import { buildPluginSnapshotReport } from "../plugins/status.js";
 import { defaultRuntime, type RuntimeEnv } from "../runtime.js";
 import { theme } from "../terminal/theme.js";
-import { shortenHomePath } from "../utils.js";
+import { resolveUserPath, shortenHomePath } from "../utils.js";
 import {
   applySlotSelectionForPlugin,
   enableInternalHookEntries,
@@ -60,6 +61,16 @@ export type ConfigSnapshotForInstallPersist = {
   baseHash: string | undefined;
 };
 
+function sourceMatchesInstalledPath(params: {
+  activeSource: string;
+  installedSource: string;
+  env?: NodeJS.ProcessEnv;
+}): boolean {
+  const activeSource = resolveUserPath(params.activeSource, params.env);
+  const installedSource = resolveUserPath(params.installedSource, params.env);
+  return activeSource === installedSource || isPathInside(installedSource, activeSource);
+}
+
 function logShadowedNpmInstallWarning(params: {
   config: OpenClawConfig;
   pluginId: string;
@@ -79,7 +90,11 @@ function logShadowedNpmInstallWarning(params: {
     onlyPluginIds: [params.pluginId],
   });
   const active = report.plugins.find((plugin) => plugin.id === params.pluginId);
-  if (!active || active.origin !== "config" || active.source === installedSource) {
+  if (
+    !active ||
+    active.origin !== "config" ||
+    sourceMatchesInstalledPath({ activeSource: active.source, installedSource })
+  ) {
     return;
   }